Our lab’s Github page:
https://github.com/amir-cardiolab
Open-source/free software:
- SimVascular: A comprehensive software from medical image data to patient-specific blood flow simulation.
- Vascular Modeling Toolkit (VMTK): A collection of Python libraries for image-based modeling of blood vessels.
- FEniCS: A flexible finite element method (FEM) platform for solving arbitrary PDEs using a Python interface.
- The Visualization Toolkit (VTK): A collection of C++ libraries for visualization and post-processing of a wide range of data. VTK libraries are available in Python, providing powerful and efficient post-processing of different types of computational data.
- ParaView: A powerful VTK based visualization/post-processing software.
- VolView: Medical image data visualization.
- OpenFlipper: Processing mesh data.
- Meshmixer: Processing triangle surface mesh data.
- FreeCAD: Scriptable 3D CAD modeler.
- FlowVC: Lagrangian processing of velocity data. FTLE, particle residence time, particle tracking, ..
Useful online lectures:
- Linear Algebra (MIT, Dr. Gilbert Strang).
- Computational Science and Engineering 1 (MIT, Dr. Gilbert Strang).
- Computational Science and Engineering 2 (MIT, Dr. Gilbert Strang).
- Nonlinear Dynamics and Chaos (Cornell, Dr. Steven Strogatz).
- Finite Element Methods in Scientific Computing (Texas A&M, Dr. Wolfgang Bangerth).
- Nonlinear Finite Element for Solids and Structures (MIT, Dr. Klaus-Jürgen Bathe).
- Introduction to Computer Science and Programming in Python (MIT).
- Computational Fluid Dynamics (Boston University, Dr. Lorena Barba).
- Classical Fluid Mechanics Lecture Series.
- Data Driven Modeling and Dynamical Systems (University of Washington, Steve Brunton)
- Data Driven Modeling and Scientific Computation (University of Washington, Nathan Kutz)